Generate hybrid structures/topologies for DNA nucleotide mutations

  • Structure file (.pdb):
  • ...
  • Force field selection:
  • Amber99SB*ILDN-BSC1
    Charmm36m
  • Number of mutations:
  • Perform a scan:
  • Select mutations:
  • 1. Chain ID
    (optional):
    1. Nucleic acid
    number:
    1. Mutate to:
  • Mutate complementary strand:
  • Use pdb2gmx to assign hydrogens?
  • Email (optional):
  • Submit the query: