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Generate hybrid structures/topologies for DNA nucleotide mutations

  • Structure file (.pdb):
    		•
    ...
  • Force field selection:
    		•  Amber99SB*ILDN-BSC1
    Charmm36m
  • Number of mutations:
    		•
  • Perform a scan:
    		•
  • Select mutations:
    		•
    1. Chain ID
    (optional):
    1. Nucleic acid
    number:
    1. Mutate to:
  • Mutate complementary strand:
    		•
  • Use pdb2gmx to assign hydrogens?
    		•
  • Email (optional):
    		•
    Submit the query: