pmx: generate hybrid protein structure and topology
Computational Biomolecular Dynamics Group
  • aws benchmark
  • pmx protein web server
  • pmx DNA web server
  • Tripeptide DB
  • Instructions
  • Citations
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  • Contact
  • Lab's website

Istanbul BioExcel EuroCC Workshop 2025 (Ligand Modification, RBFE)

Coimbra BioExcel EuroCC Workshop 2024 (Ligand Modification, RBFE)

Tutorial 1: Solvation Free Energy
Tutorial 2: Protein-Ligand Relative Binding Free Energy (RBFE, Ligand Modification)

BioExcel Summer School 2020
Tutorial 1: Amino acid mutation
Tutorial 2: Ligand modification

Tutorial for using the webserver:
Webserver tutorial

Old Tutorials (2015-2019)



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